RA blocks CARGO CHECK from command line

I'm using spacemacs (emacs) and nightly compiler. Whenever I fire up the editor I can't run cargo check anymore from the command line, or any other cargo command. It seems to me that RA and cargo are using different compilers or settings..but my impression was that they are both taking their settings from the cargo files (it's a workspace).
When the block stops (when I close emacs) it rebuilds the entire project which takes about ten minutes.
On top of that, it doesn't actually work in emacs, never shows me errors or warnings. Go to definition works occasionaly.
This came out of the blue and I have no idea why. It seems to work in intellij though (I'm not sure they use RA).

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