How to make individual projects inside workspace use their own build targets

I have a native project and a wasm project inside my workkspace, when I build this project the wasm project fails as it seems to use the build settings from the native project.

How can I force each project to use its own project configs including the target?

Currently, the only way to do this is to not use a workspace (or: have one workspace-or-package for wasm and one for native.)

You can still have path dependencies from one to libraries in the other.

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